| 1 | Mayo Senior HighROCHESTER | High | 1,820 |
| 2 | CENTURY SENIOR HIGHROCHESTER | High | 1,722 |
| 3 | JOHN MARSHALL SENIOR HIGHROCHESTER | High | 1,521 |
| 4 | Dakota Middle SchoolROCHESTER | Middle | 1,003 |
| 5 | WILLOW CREEK MIDDLEROCHESTER | Middle | 834 |
| 6 | JOHN ADAMS MIDDLEROCHESTER | Middle | 801 |
| 7 | KELLOGG MIDDLEROCHESTER | Middle | 781 |
| 8 | Gibbs ElementaryROCHESTER | Primary | 725 |
| 9 | BAMBER VALLEY ELEMENTARYROCHESTER | Primary | 613 |
| 10 | GAGE ELEMENTARYROCHESTER | Primary | 563 |
| 11 | Overland Elementary SchoolROCHESTER | Primary | 555 |
| 12 | BISHOP ELEMENTARYROCHESTER | Primary | 536 |
| 13 | FRANKLIN ELEMENTARYROCHESTER | Primary | 492 |
| 14 | JEFFERSON ELEMENTARYROCHESTER | Primary | 488 |
| 15 | Lincoln K-8 District-Wide SchoolROCHESTER | Primary | 488 |
| 16 | SUNSET TERRACE ELEMENTARYROCHESTER | Primary | 412 |
| 17 | RIVERSIDE CENTRAL ELEMENTARYROCHESTER | Primary | 388 |
| 18 | Rochester Alternative Learning CntrROCHESTER | High | 376 |
| 19 | Longfellow 45-15 Districtwide ElemROCHESTER | Primary | 334 |
| 20 | FOLWELL ELEMENTARYROCHESTER | Primary | 331 |
| 21 | Washington District-Wide ElementaryROCHESTER | Primary | 325 |
| 22 | ELTON HILLS ELEMENTARYROCHESTER | Primary | 323 |
| 23 | PINEWOOD ELEMENTARYROCHESTER | Primary | 275 |
| 24 | HOOVER ELEMENTARYROCHESTER | Primary | 240 |
| 25 | RPS Online High SchoolROCHESTER | High | 201 |
| 26 | CHURCHILL ELEMENTARYROCHESTER | Primary | 195 |
| 27 | Hoover Early Learning SchoolROCHESTER | -- | 194 |
| 28 | Montessori at Franklin ElementaryROCHESTER | Primary | 174 |
| 29 | EARLY CHILDHOOD INTERVENTIONROCHESTER | -- | 142 |
| 30 | Rochester Phoenix AcademyROCHESTER | Other | 81 |
| 31 | RPS Online Elementary SchoolROCHESTER | Primary | 77 |
| 32 | Mighty Oaks Early Learning SchoolROCHESTER | -- | 76 |
| 33 | Rochester Academy-Idp Living(RAIL)ROCHESTER | High | 73 |
| 34 | RPS Online Middle SchoolROCHESTER | Middle | 58 |
| 35 | PrairieCareROCHESTER | Other | 32 |
| 36 | ECSE CommunityROCHESTER | -- | 30 |
| 37 | Middle School Right FitROCHESTER | Middle | 27 |
| 38 | Project Search Mayo ClinicROCHESTER | High | 9 |
| 39 | LEAP Launching Emerging Adults PrgROCHESTER | High | 6 |
| 40 | Southeast Regional Crisis CenterROCHESTER | High | 5 |
| 41 | Care & Treatment at ESCROCHESTER | High | 5 |
| 42 | CARE & TREATMENT HOSPITAL/HOMEBOUNDROCHESTER | Other | 4 |
| 43 | Rochester ALC Recovery ProgramROCHESTER | High | 4 |
| 44 | Early Childhood AssessmentROCHESTER | -- | 2 |
| 45 | CREDIT RECOVERYROCHESTER | High | 1 |
| 46 | ALC SUMMER CREDIT RECOVERYROCHESTER | High | 0 |
| 47 | Middle School ALCROCHESTER | -- | 0 |
| 48 | P-TECH 535ROCHESTER | High | 0 |
| 49 | EARLY CHILDHOOD YEAR ROUNDROCHESTER | Primary | 0 |
| 50 | Out of State Care and TreatmentROCHESTER | Other | 0 |